GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLCA | cis | rs4141404 | 1 | rs13054220 | chr22:31704492 | C22orf30 | chr22:32072242-32146120:- | 0.21 | 3.9 | 0.000114 | Paclitaxel-induced neuropathy |
| BLCA | cis | rs13053817 | 1 | rs13055259 | chr22:29856892 | MTMR3 | chr22:30279158-30426855:+ | 0.25 | 3.94 | 9.79E-5 | Carotid atherosclerosis in HIV infection |
| BLCA | cis | rs13053817 | 1 | rs13055259 | chr22:29856892 | NIPSNAP1 | chr22:29950800-29977144:- | 0.28 | 3.88 | 0.000125 | Carotid atherosclerosis in HIV infection |
| BLCA | cis | rs13053817 | 1 | rs13055707 | chr22:29851172 | MTMR3 | chr22:30279158-30426855:+ | 0.25 | 3.99 | 7.85E-5 | Carotid atherosclerosis in HIV infection |
| BLCA | cis | rs13053817 | 1 | rs13055707 | chr22:29851172 | NIPSNAP1 | chr22:29950800-29977144:- | 0.28 | 3.92 | 0.000105 | Carotid atherosclerosis in HIV infection |
| BLCA | cis | rs13053817 | 1 | rs13057382 | chr22:29850334 | MTMR3 | chr22:30279158-30426855:+ | 0.25 | 4.01 | 7.37E-5 | Carotid atherosclerosis in HIV infection |
| BLCA | cis | rs13053817 | 1 | rs13057382 | chr22:29850334 | NIPSNAP1 | chr22:29950800-29977144:- | 0.3 | 4.2 | 3.32E-5 | Carotid atherosclerosis in HIV infection |
| BLCA | cis | rs13053817 | 1 | rs13057815 | chr22:29853526 | MTMR3 | chr22:30279158-30426855:+ | 0.25 | 3.94 | 9.79E-5 | Carotid atherosclerosis in HIV infection |
| BLCA | cis | rs13053817 | 1 | rs13057815 | chr22:29853526 | NIPSNAP1 | chr22:29950800-29977144:- | 0.28 | 3.88 | 0.000125 | Carotid atherosclerosis in HIV infection |
| BLCA | cis | rs10935120 | 1 | rs13059720 | chr3:134242021 | ANAPC13 | chr3:134196547-134204865:- | -0.5 | -7.96 | 2.01E-14 | Height |
| BLCA | cis | rs10935120 | 1 | rs13059720 | chr3:134242021 | CEP63 | chr3:134204575-134293852:+ | -0.24 | -4.2 | 3.39E-5 | Height |
| BLCA | cis | rs7611238 | 1 | rs13059843 | chr3:195028183 | C3orf21 | chr3:194789015-194991895:- | 0.29 | 5.58 | 4.62E-8 | Body mass index |
| BLCA | cis | rs7611238 | 1 | rs13062518 | chr3:195038287 | C3orf21 | chr3:194789015-194991895:- | 0.28 | 5.37 | 1.34E-7 | Body mass index |
| BLCA | cis | rs10935120 | 1 | rs13071551 | chr3:134310867 | ANAPC13 | chr3:134196547-134204865:- | -0.5 | -7.94 | 2.24E-14 | Height |
| BLCA | cis | rs10935120 | 1 | rs13071551 | chr3:134310867 | CEP63 | chr3:134204575-134293852:+ | -0.24 | -4.14 | 4.32E-5 | Height |